생의학 분야 학술 논문에서의 개체명 인식 및 관계 추출을 위한 언어 자원 수집 및 통합적 구조화 방안 연구 (A Study on Collecting and Structuring Language Resource for Named Entity Recognition and Relation Extraction from Biomedical Abstracts)

강슬기 (Seul-ki Kang); 최윤수; 최성필 (SungPil Choi)

doi:10.4275/KSLIS.2017.51.4.227

A Study on Collecting and Structuring Language Resource for Named Entity Recognition and Relation Extraction from Biomedical Abstracts

Journal of the Korean Society for Library and Information Science
2017, 51(4), pp.227~248
DOI : 10.4275/KSLIS.2017.51.4.227
Publisher : 한국문헌정보학회
Research Area : Interdisciplinary Studies > Library and Information Science

Seul-ki Kang ¹, 최윤수 ², SungPil Choi ¹

¹경기대학교
²한국과학기술정보연구원

Accredited

ABSTRACT

This paper introduces an integrated model for systematically constructing a linguistic resource database that can be used by machine learning-based biomedical information extraction systems. The proposed method suggests an orderly process of collecting and constructing dictionaries and training sets for both named-entity recognition and relation extraction. Multiple heterogeneous structures for the resources which are collected from diverse sources are analyzed to derive essential items and fields for constructing the integrated database. All the collected resources are converted and refined to build an integrated linguistic resource storage. In this paper, we constructed entity dictionaries of gene, protein, disease and drug, which are considered core linguistic elements or core named entities in the biomedical domains and conducted verification tests to measure their acceptability.

KEYWORDS

Information Extraction, Named-Entity Recognition, Relation Extraction, Bio-text Mining, Training Set

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